PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10483_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 116aa    MW: 12796 Da    PI: 8.5112
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10483_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.2e-093312255
                 HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                  L+el+P++     +K +Ka+iL +A++Y+ksL+
  RrC10483_p1  3 ALQELIPHC-----TKTDKASILDEAIDYMKSLK 31
                 79*******.....9****************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-10156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.96E-9135No hitNo description
Gene3DG3DSA:4.10.280.103.0E-10135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.69130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-6330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MKALQELIPH CTKTDKASIL DEAIDYMKSL KIQVQVTWMG SRMAGAAVAP MVFPGVQPQM  60
QSPVQLPRFP VMDPSAIQNN PGLVCGNPVQ NQVFSERFDR CMGVFPHLQA ASQVRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508482.13e-55PREDICTED: transcription factor PIF4-like
RefseqXP_010508483.13e-55PREDICTED: transcription factor PIF4-like
RefseqXP_010508484.13e-55PREDICTED: transcription factor PIF4-like
SwissprotQ8W2F35e-52PIF4_ARATH; Transcription factor PIF4
TrEMBLA0A078HZN71e-53A0A078HZN7_BRANA; BnaC03g23970D protein
STRINGfgenesh2_kg.4__2461__AT2G43010.26e-53(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34682561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.13e-53phytochrome interacting factor 4